BMC Bioinformatics | Full text | A comparison of methods for differential expression analysis of RNA

Eleven methods for differential expression analysis of RNA-seq data were evaluated in this study. Nine of them work on the count data directly: DESeq [7], edgeR [23], NBPSeq [15], TSPM [13], baySeq [14], EBSeq [24], NOISeq [25], SAMseq [26] and ...

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